sRNA Workbench 4.5.1

sRNA silencing is a complex, highly-conserved, transcriptional and post-transcriptional mechanism that tunes gene expression. RNA silencing is mediated by molecules known as small RNAs (sRNAs). Well-known examples of sRNAs include short-interfering RNA (siRNA), microRNAs (miRNAs), trans-acting short-interfering RNA (tasi-RNA) and Piwi-interacting RNA (piRNA). It was originally studied as a defence mechanism against pathogens in plants and later studied extensively due to its ability to regulate cancer-related genes.

The UEA sRNA workbench is a new simple to use, downloadable sRNA software package based on algorithms developed for the original UEA sRNA Toolkit that will perform a complete analysis of single or multiple-sample sRNA datasets from both plants and animals to identify interesting landmarks (such as detection of novel miRNA sequences) in genetic data.

A complete list of the functionality offered in the UEA sRNA Workbench and detailed help on each tool can be found at the tools pages. Alternatively, an extensive help menu is available from the sRNA Workbench when running in GUI mode.

Features:

Adaptor Remover: removes adaptor fragments from raw short read sequence data and outputs data to FASTA format.
Filter: produces a filtered version of an sRNA dataset, controlled by several user-defined criteria, including sequence length, abundance, complexity, transfer and ribosomal RNA removal.
miRCat2 (miRNA Categorisation): predicts mature miRNAs and their precursors from an sRNA dataset and a genome.
SiLoCo (Short interfering RNA Locus Comparison): compares sRNA expression levels in multiple samples by grouping sRNAs into loci based on genomic location
ta-siRNA (trans-acting short interfering RNA): prediction of phased ta-siRNAs in plant sRNA datasets.
miRProf (miRNA Profiler): determines normalised expression levels of sRNAs matching known miRNAs in miRBase.
Hairpin Annotation: generates a secondary structure from an RNA sequence and highlights regions of interest using RNAplot
VisSR (Visualisation of sRNAs): generate a visual representation of sRNAs and user-imported genomic features.
PAREsnip2: Identify miRNA targets evidenced through the degradome

Author UEA sRNA Workbench Team
License Freeware
Price FREE
Released 2019-02-25
Downloads 230
Filesize 235.00 MB
Requirements
Installation Instal And Uninstall
Keywords sRNA analysis, sRNA dataset, sequence analysis, sequence, sRNA, analysis
Users' rating
(12 rating)
sRNA WorkbenchCADWindows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64
sRNA Workbench - Download Notice

Using sRNA Workbench Free Download crack, warez, password, serial numbers, torrent, keygen, registration codes, key generators is illegal and your business could subject you to lawsuits and leave your operating systems without patches. We do not host any torrent files or links of sRNA Workbench on rapidshare.com, depositfiles.com, megaupload.com etc. All sRNA Workbench download links are direct sRNA Workbench full download from publisher site or their selected mirrors.
Avoid: oem software, old version, warez, serial, torrent, sRNA Workbench keygen, crack.
Consider: sRNA Workbench full version, full download, premium download, licensed copy.

sRNA Workbench - The Latest User Reviews

Most popular CAD downloads

Carlson Design Sailform

1.0.50 download

A traditional broadseaming sail design program

OpenDCL Studio

9.1.5.2 download

A tool to help AutoLISP programmers with their work

SpliceGrapher

0.2.7 download

Tool that helps you predict splice graphs from various evidence

MaxIm DL

6.05 download

A comprehensive astronomical manager and photo editor

DWG DXF to Images Converter

2.1 download

Batch convert DWG and DXF to JPG, TIFF, BMP, GIF, PNG, SVG, CGM, WMF and EMF wit

20sim Viewer

4.8.4 download

A modeling and simulation program that runs under Microsoft Windows

VerticesBlk

1.4 download

Autocad extension for inserting blocks at each line

TurboCAD Deluxe

2016 download

TurboCAD Deluxe: Powerful 2D/3D drafting, modeling, and photorealistic rendering

MITCalc Spur Gear Calculation

1.24 download

Geometric design and strength check of spur gear (straight and helical)

hsCADView

4.0.134.2 download

Visualize and measure intricate CAD drawings in both 2D and 3D.