PyPedal 2.0.3

PyPedal is designed as Python module that is supposed to provide instruments for the manipulation of pedigrees. The tools provided can also offer simple visualization of pedigrees and the calculation of measures of genetic diversity from pedigrees.

Features

Reading pedigree files in user-defined formats
Checking pedigree integrity (duplicate IDs, parents younger than offspring, etc.)
Generating summary information such as frequency of appearance in the pedigree file
Reordering and renumbering of pedigree files
Computation of the numerator relationship matrix (A) from a pedigree file using the tabular method
Inbreeding calculations for large pedigrees
Computation of average total and average individual coefficients of inbreeding and relationship
Calculation of coefficients of partial inbreeding using an iterative tabular method (Lacy, 1996; Gulisija, 2006)
Calculation of coefficients of ancestral inbreeding using the methods of Ballou (1997) or Suwanlee et al. (2007)
Calculation of theoretical and actual effective population sizes
Computation of effective founder number using the exact algorithm of Lacy
Computation of effective founder number using the approximate algorithm of Boichard et al.
Computation of effective ancestor number using the algorithms of Boichard et al.
Selection of subpedigrees containing all ancestors of an animal
Identification of the common relatives of two animals
Calculation of the inbreeding of offspring from a prospective mating
Output to ASCII text files, including matrices, coefficients of inbreeding and relationship, and summary information
Importation and exportation of GEDCOM 5.5 files
Importation and exportation of GENES 1.20 (dBase III) files
Loading pedigrees from, and saving them to, MySQL, Postgres, and SQLite databases
Simulation of pedigrees using an algorithm derived from that in Matvec 1.1a

Author John B. Cole
License Open Source
Price FREE
Released 2012-05-25
Downloads 164
Filesize 15.70 MB
Requirements
Installation Instal And Uninstall
Keywords pedigree manipulation, manipulate pedigree, genetic diversity, pedigree, manipulation, manipulator
Users' rating
(1 rating)
PyPedalCADWindows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64
PyPedal - Download Notice

Using PyPedal Free Download crack, warez, password, serial numbers, torrent, keygen, registration codes, key generators is illegal and your business could subject you to lawsuits and leave your operating systems without patches. We do not host any torrent files or links of PyPedal on rapidshare.com, depositfiles.com, megaupload.com etc. All PyPedal download links are direct PyPedal full download from publisher site or their selected mirrors.
Avoid: oem software, old version, warez, serial, torrent, PyPedal keygen, crack.
Consider: PyPedal full version, full download, premium download, licensed copy.

PyPedal - The Latest User Reviews

Most popular CAD downloads

DXF Laser Cutting Fonts

5.1 download

CAD Tool for fast creating of letterings, signs and stencils.

iTrain

5.1.4 download

An easy to use solution to control your model railroad with your computer

TNTmips

2022 B20221123 download

Analyze complex GIS data, process and modify map images

MITCalc Bevel Gear Calculation

1.20 download

Geometric design and strength check of bevel gear (straight, helical and curved)

MITCalc V-Belts Calculation

1.22 download

Geometric design and strength check of V-belt transmission

MITCalc Shafts Calculation

1.24 download

Geometrical design and complex strength check of shafts

MITCalc Spur Gear Calculation

1.24 download

Geometric design and strength check of spur gear (straight and helical)

MITCalc Timing Belts Calculation

1.21 download

Geometric design and strength check of timing belt transmission

MITCalc Rolling Bearings Calculation I

1.20 download

Selection, calculation and check of rolling bearings SKF

MITCalc - Tolerances

1.18 download

Tolerances, deviations and fits of machine parts